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1. WO2020062160 - LAYING HEN WHOLE GENOME SNP CHIP AND USE THEREOF

Publication Number WO/2020/062160
Publication Date 02.04.2020
International Application No. PCT/CN2018/108741
International Filing Date 29.09.2018
IPC
C12Q 1/6869 2018.01
CCHEMISTRY; METALLURGY
12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
1Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
68involving nucleic acids
6869Methods for sequencing
C12Q 1/6827 2018.01
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12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
1Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
68involving nucleic acids
6813Hybridisation assays
6827for detection of mutation or polymorphism
C12N 15/11 2006.01
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NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
15Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
09Recombinant DNA-technology
11DNA or RNA fragments; Modified forms thereof
CPC
C12N 15/11
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12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
15Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
09Recombinant DNA-technology
11DNA or RNA fragments; Modified forms thereof
C12Q 1/6827
CCHEMISTRY; METALLURGY
12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS
1Measuring or testing processes involving enzymes, nucleic acids or microorganisms
68involving nucleic acids
6813Hybridisation assays
6827for detection of mutation or polymorphism
C12Q 1/6869
CCHEMISTRY; METALLURGY
12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS
1Measuring or testing processes involving enzymes, nucleic acids or microorganisms
68involving nucleic acids
6869Methods for sequencing
Applicants
  • 中国农业大学 CHINA AGRICULTURAL UNIVERSITY [CN]/[CN]
Inventors
  • 杨宁 YANG, Ning
  • 孙从佼 SUN, Congjiao
  • 刘壮 LIU, Zhuang
  • 闫奕源 YAN, Yiyuan
  • 吴桂琴 WU, Guiqin
Agents
  • 北京路浩知识产权代理有限公司 CN-KNOWHOW INTELLECTUAL PROPERTY AGENT LIMITED
Priority Data
Publication Language Chinese (ZH)
Filing Language Chinese (ZH)
Designated States
Title
(EN) LAYING HEN WHOLE GENOME SNP CHIP AND USE THEREOF
(FR) PUCE À SNP DE GÉNOME COMPLET DE POULES PONDEUSES ET UTILISATION CORRESPONDANTE
(ZH) 一种蛋鸡全基因组SNP芯片及其应用
Abstract
(EN)
Provided are a laying hen whole genome SNP chip and the use thereof. The SNP sites of the chip are respectively derived from 14,624 SNP sites shared by each line of the major laying hens in China; 3,677 SNP sites associated with disease-resistant traits in laying hens; 16,000 SNP sites associated with economic traits in laying hens; and 9,358 SNP sites making up genomic regions not covered by the foregoing probes. The 43,681 SNPs on the laying hen whole genome SNP chip have DNA sequences as shown in SEQ ID NO. 1-43681. The chip can specifically identify the genetic relationship between commercial laying hens and laying hens of local races, and can also perform applications such as whole genome association analysis, whole genome selective breeding, and QTL location analysis of target traits and population genetic analysis.
(FR)
Puce SNP de génome complet de poules pondeuses et utilisation coorespondante. Les sites SNP de la puce sont respectivement dérivés de 14'624 sites SNP partagés par chaque lignée des principales poules pondeuses en Chine; 3'677 sites SNP sont liés à des traits de résistance aux maladies chez les poules pondeuses; 16'000 sites SNP sont liés à des caractéristiques influençant l'économie dans le domaine des poules pondeuses; et 9'358 des sites SNP constituent des régions génomiques non couvertes par les sondes précédentes. Les 43'681 SNP sur la puce SNP de génome complet de poules pondeuses ont des séquences d'ADN telles que présentées dans SEQ ID NO. 1-43681. La puce peut identifier spécifiquement la relation génétique entre des poules pondeuses commerciales et des poules pondeuses de races locales, et peut également effectuer des opérations telles que l'analyse d'association de génome complet, le croisement sélectif basé sur le génome complet, et l'analyse d'emplacement de QTL de caractères cibles et l'analyse génétique d'une population.
(ZH)
提供了一种蛋鸡全基因组SNP芯片及其应用,该芯片上的SNP位点分别源于中国主要蛋鸡各品系共有的14624个SNP位点;与蛋鸡抗病性状相关的3677个SNP位点;与蛋鸡经济性状相关联的1.6万个SNP位点;弥补前述探针未覆盖的基因组区域的9358个SNP位点。该蛋鸡全基因组SNP芯片上的43681个SNP具有SEQ ID NO.1-43681所示的DNA序列,该芯片可以特异性地鉴定商业化蛋鸡与地方品种蛋鸡的亲缘关系,还可以进行全基因组关联分析、全基因组选择育种,以及目标性状QTL定位分析和群体遗传学分析等应用。
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