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1. (WO2019046540) METHODS AND COMPOSITIONS COMPRISING CRISPR-CPF1 AND PAIRED GUIDE CRISPR RNAS FOR PROGRAMMABLE GENOMIC DELETIONS
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Pub. No.: WO/2019/046540 International Application No.: PCT/US2018/048767
Publication Date: 07.03.2019 International Filing Date: 30.08.2018
IPC:
C12N 15/11 (2006.01) ,C12N 15/82 (2006.01) ,C12N 15/85 (2006.01)
C CHEMISTRY; METALLURGY
12
BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
N
MICRO-ORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICRO-ORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
15
Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
09
Recombinant DNA-technology
11
DNA or RNA fragments; Modified forms thereof
C CHEMISTRY; METALLURGY
12
BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
N
MICRO-ORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICRO-ORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
15
Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
09
Recombinant DNA-technology
63
Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
79
Vectors or expression systems specially adapted for eukaryotic hosts
82
for plant cells
C CHEMISTRY; METALLURGY
12
BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
N
MICRO-ORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICRO-ORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
15
Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
09
Recombinant DNA-technology
63
Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
79
Vectors or expression systems specially adapted for eukaryotic hosts
85
for animal cells
Applicants:
NEW YORK GENOME CENTER, INC. [US/US]; 101 Avenue Of The Americas New York, NY 10013, US
NEW YORK UNIVERSITY [US/US]; 70 Washington Square South New York, NY 10012, US
Inventors:
SANJANA, Neville, Espi; US
Agent:
BAK, Mary E.; US
KODROFF, Cathy, A.; US
DUMINIAK, Robert, J.; US
BAK, Mary, E.; US
Priority Data:
62/552,81631.08.2017US
Title (EN) METHODS AND COMPOSITIONS COMPRISING CRISPR-CPF1 AND PAIRED GUIDE CRISPR RNAS FOR PROGRAMMABLE GENOMIC DELETIONS
(FR) PROCÉDÉS ET COMPOSITIONS COMPRENANT CRISPR-CPF1 ET DES ARN CRISPR DE GUIDAGE APPARIÉS DESTINÉS À DES DÉLÉTIONS GÉNOMIQUES PROGRAMMABLES
Abstract:
(EN) Described are methods comprises transducing a mammalian cell with one or more virus vectors. Each vector comprises a nucleic acid sequence encoding a Cpfl (also known as Casl2a) protein and an optional selectable marker in operative association with an RNA pol II promoter which controls expression thereof; and a CRISPR RNA (crRNA) array comprising at least two spacers in operative association with an RNA pol III promoter. Each spacer encodes an RNA guide which hybridizes to a unique sequence located 3' from a T-rich protospacer-adjacent motif (PAM) in a genomic region of interest. The method further comprises culturing the transduced cells, thereby providing a plurality of cultured cell cultures, each cell culture comprising said deletion. Additionally, described are compositions used in methods as well as libraries generated by the methods. Such compositions comprise libraries of transduced cell cultures, viral vectors, nucleic acid sequences, CRISPR RNA spacers, and RNA guides, as described herein.
(FR) L'invention concerne des procédés comprenant la transduction d'une cellule de mammifère avec un ou plusieurs vecteurs de virus. Chaque vecteur comprend une séquence d'acide nucléique codant pour une protéine Cpfl (également connue sous le nom de Casl2a) et un marqueur sélectionnable éventuel en association fonctionnelle avec un promoteur pol II d'ARN, qui commande l'expression de cette dernière ; et un réseau d'ARN CRISPR (ARNcr) comprenant au moins deux espaceurs en association fonctionnelle avec un promoteur pol III d'ARN. Chaque espaceur code pour un guide d'ARN qui s'hybride à une séquence unique située à 3' à partir d'un motif adjacent au proto-espaceur (PAM) riche en T dans une région génomique d'intérêt. Le procédé comprend en outre la culture des cellules transduites, ce qui permet d'obtenir une pluralité de cultures de cellules cultivées, chaque culture de cellules comprenant ladite délétion. De plus, l'invention concerne des compositions utilisées dans des procédés ainsi que des bibliothèques générées par les procédés. De telles compositions comprennent des bibliothèques de cultures de cellules transduites, des vecteurs viraux, des séquences d'acides nucléiques, des espaceurs d'ARN CRISPR et des guides d'ARN, tels que décrits ici.
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Designated States: AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, HN, HR, HU, ID, IL, IN, IR, IS, JO, JP, KE, KG, KH, KN, KP, KR, KW, KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW
African Regional Intellectual Property Organization (ARIPO) (BW, GH, GM, KE, LR, LS, MW, MZ, NA, RW, SD, SL, ST, SZ, TZ, UG, ZM, ZW)
Eurasian Patent Office (AM, AZ, BY, KG, KZ, RU, TJ, TM)
European Patent Office (EPO) (AL, AT, BE, BG, CH, CY, CZ, DE, DK, EE, ES, FI, FR, GB, GR, HR, HU, IE, IS, IT, LT, LU, LV, MC, MK, MT, NL, NO, PL, PT, RO, RS, SE, SI, SK, SM, TR)
African Intellectual Property Organization (BF, BJ, CF, CG, CI, CM, GA, GN, GQ, GW, KM, ML, MR, NE, SN, TD, TG)
Publication Language: English (EN)
Filing Language: English (EN)