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1. WO2018208699 - UNIVERSAL SHORT ADAPTERS FOR INDEXING OF POLYNUCLEOTIDE SAMPLES

Publication Number WO/2018/208699
Publication Date 15.11.2018
International Application No. PCT/US2018/031459
International Filing Date 07.05.2018
Chapter 2 Demand Filed 07.03.2019
IPC
[IPC code unknown for C12Q 1/6869]
G PHYSICS
06
COMPUTING; CALCULATING; COUNTING
F
ELECTRIC DIGITAL DATA PROCESSING
19
Digital computing or data processing equipment or methods, specially adapted for specific applications
10
Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology
22
for sequence comparison involving nucleotides or amino acids, e.g. homology search, motif or SNP [Single-Nucleotide Polymorphism] discovery or sequence alignment
C CHEMISTRY; METALLURGY
12
BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
N
MICRO-ORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICRO-ORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
15
Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
09
Recombinant DNA-technology
10
Processes for the isolation, preparation or purification of DNA or RNA
C12Q 1/6869 (2018.01)
G06F 19/22 (2011.01)
C12N 15/10 (2006.01)
CPC
C12Q 1/6869
C12Q 1/6874
G16B 25/00
G16B 25/20
G16B 30/00
Applicants
  • ILLUMINA, INC. [US/US]; 5200 Illumina Way San Diego, California 92122, US
Inventors
  • SINGER, Tatjana; US
  • KELLEY, Ryan; US
  • BEAN, Gordon; US
  • VERMAAS, Eric; US
Agents
  • ZHOU, Feng; US
  • WEAVER, Jeffrey K.; US
  • AUSTIN, James E.; US
  • VILLENEUVE, Joseph M.; US
  • SAMPSON, Roger S.; US
  • BERGIN, Denise S.; US
  • GRIFFITH, John F.; US
  • SCHOLZ, Christian D.; US
Priority Data
62/503,27208.05.2017US
62/524,39023.06.2017US
Publication Language English (EN)
Filing Language English (EN)
Designated States
Title
(EN) UNIVERSAL SHORT ADAPTERS FOR INDEXING OF POLYNUCLEOTIDE SAMPLES
(FR) COURTS ADAPTATEURS UNIVERSELS POUR L'INDEXAGE D'ÉCHANTILLONS DE POLYNUCLÉOTIDES
Abstract
(EN)
The disclosed embodiments concern index oligonucleotides configured to identify sources of samples of nucleic acids and methods, apparatus, systems and computer program products for identifying and making the index oligonucleotides. In some implementations, the index oligonucleotides include a set of index sequences, a Hamming distance between any two index sequences of the set of index sequences meeting one or more criteria. System, apparatus, and computer program products are also provided for determining a sequence of interest using the index oligonucleotides.
(FR)
Selon les modes de réalisation décrits, l'invention concerne des oligonucléotides d'indexage conçus pour identifier des sources d'échantillons d'acides nucléiques et des procédés, un appareil, des systèmes et des produits-programmes d'ordinateur pour identifier et produire lesdits oligonucléotides d'indexage. Dans certains modes de réalisation, les oligonucléotides d'indexage comprennent un ensemble de séquences d'indexage, et une distance de Hamming entre deux séquences d'indexage quelconques de l'ensemble de séquences d'indexage satisfaisant un ou plusieurs critères. Un système, un appareil et des produits-programmes d'ordinateur permettant de déterminer une séquence d'intérêt à l'aide de procédés selon l'invention sont en outre décrits.
Also published as
EP2018727517
Latest bibliographic data on file with the International Bureau