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1. (WO2018183493) SIGNATURE-HASH FOR MULTI-SEQUENCE FILES
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Pub. No.: WO/2018/183493 International Application No.: PCT/US2018/024838
Publication Date: 04.10.2018 International Filing Date: 28.03.2018
IPC:
G06F 19/22 (2011.01) ,G06F 19/18 (2011.01) ,C12Q 1/6888 (2018.01)
G PHYSICS
06
COMPUTING; CALCULATING; COUNTING
F
ELECTRIC DIGITAL DATA PROCESSING
19
Digital computing or data processing equipment or methods, specially adapted for specific applications
10
Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology
22
for sequence comparison involving nucleotides or amino acids, e.g. homology search, motif or SNP [Single-Nucleotide Polymorphism] discovery or sequence alignment
G PHYSICS
06
COMPUTING; CALCULATING; COUNTING
F
ELECTRIC DIGITAL DATA PROCESSING
19
Digital computing or data processing equipment or methods, specially adapted for specific applications
10
Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology
18
for functional genomics or proteomics, e.g. genotype-phenotype associations, linkage disequilibrium, population genetics, binding site identification, mutagenesis, genotyping or genome annotation, protein-protein interactions or protein-nucleic acid interactions
[IPC code unknown for C12Q 1/6888]
Applicants:
NANTOMICS, LLC [US/US]; 9920 Jefferson Boulevard Culver City, California 90232, US
Inventors:
SANBORN, John Zachary; US
BENZ, Stephen Charles; US
PARULKAR, Rahul; US
Agent:
FESSENMAIER, Martin; US
SHIN, Minyoung; US
Priority Data:
62/478,53129.03.2017US
Title (EN) SIGNATURE-HASH FOR MULTI-SEQUENCE FILES
(FR) HACHAGE DE SIGNATURE POUR FICHIERS À SÉQUENCES MULTIPLES
Abstract:
(EN) A unique hash representing patient omics data is constructed using results for known SNP positions and their respective allele frequencies in the patient's omics data. In most preferred aspects, the known SNP positions are selected for specific factors (e.g., ethnicity, sex, etc.) and the allele fraction is represented in values of a non-linear scale. Typically, the hash comprises a header/metadata relating to the known SNP positions and non-linear scale and further includes the actual hash string.
(FR) L’invention concerne un hachage unique représentant des données omiques de patient qui est construit en utilisant des résultats pour des positions SNP connues et leurs fréquences d'allèle respectives dans les données omiques du patient. Dans la plupart des aspects préférés, les positions SNP connues sont sélectionnées pour des facteurs spécifiques (par exemple, ethnicité, sexe, etc.) et la fraction d'allèle est représentée par des valeurs d'une échelle non linéaire. D’une manière générale, le hachage comprend un en-tête/métadonnées se rapportant aux positions SNP connues et à l'échelle non linéaire et comprend en outre la chaîne de hachage réelle
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Designated States: AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, HN, HR, HU, ID, IL, IN, IR, IS, JO, JP, KE, KG, KH, KN, KP, KR, KW, KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW
African Regional Intellectual Property Organization (ARIPO) (BW, GH, GM, KE, LR, LS, MW, MZ, NA, RW, SD, SL, ST, SZ, TZ, UG, ZM, ZW)
Eurasian Patent Office (AM, AZ, BY, KG, KZ, RU, TJ, TM)
European Patent Office (EPO) (AL, AT, BE, BG, CH, CY, CZ, DE, DK, EE, ES, FI, FR, GB, GR, HR, HU, IE, IS, IT, LT, LU, LV, MC, MK, MT, NL, NO, PL, PT, RO, RS, SE, SI, SK, SM, TR)
African Intellectual Property Organization (BF, BJ, CF, CG, CI, CM, GA, GN, GQ, GW, KM, ML, MR, NE, SN, TD, TG)
Publication Language: English (EN)
Filing Language: English (EN)