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1. WO2018135838 - METHOD FOR IDENTIFYING BASE EDITING OFF-TARGET SITE BY DNA SINGLE STRAND BREAK

Publication Number WO/2018/135838
Publication Date 26.07.2018
International Application No. PCT/KR2018/000747
International Filing Date 16.01.2018
IPC
C12Q 1/68 2006.01
CCHEMISTRY; METALLURGY
12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
1Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
68involving nucleic acids
C12N 9/22 2006.01
CCHEMISTRY; METALLURGY
12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
9Enzymes, e.g. ligases (6.); Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating, or purifying enzymes
14Hydrolases (3.)
16acting on ester bonds (3.1)
22Ribonucleases
C12N 9/78 2006.01
CCHEMISTRY; METALLURGY
12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
9Enzymes, e.g. ligases (6.); Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating, or purifying enzymes
14Hydrolases (3.)
78acting on carbon to nitrogen bonds other than peptide bonds (3.5)
CPC
A01G 13/0206
AHUMAN NECESSITIES
01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
GHORTICULTURE; CULTIVATION OF VEGETABLES, FLOWERS, RICE, FRUIT, VINES, HOPS OR SEAWEED; FORESTRY; WATERING
13Protecting plants
02Protective coverings for plants; Coverings for the ground;; Devices for laying-out ; or removing; coverings
0206Canopies, i.e. devices providing a roof above the plants
A01G 13/025
AHUMAN NECESSITIES
01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
GHORTICULTURE; CULTIVATION OF VEGETABLES, FLOWERS, RICE, FRUIT, VINES, HOPS OR SEAWEED; FORESTRY; WATERING
13Protecting plants
02Protective coverings for plants; Coverings for the ground;; Devices for laying-out ; or removing; coverings
025Devices for laying-out or removing plant coverings
C12N 15/102
CCHEMISTRY; METALLURGY
12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
15Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
09Recombinant DNA-technology
10Processes for the isolation, preparation or purification of DNA or RNA
102Mutagenizing nucleic acids
C12N 15/113
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12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
15Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
09Recombinant DNA-technology
11DNA or RNA fragments; Modified forms thereof
113Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
C12N 15/90
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12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
15Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
09Recombinant DNA-technology
87Introduction of foreign genetic material using processes not otherwise provided for, e.g. co-transformation
90Stable introduction of foreign DNA into chromosome
C12N 15/902
CCHEMISTRY; METALLURGY
12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
15Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
09Recombinant DNA-technology
87Introduction of foreign genetic material using processes not otherwise provided for, e.g. co-transformation
90Stable introduction of foreign DNA into chromosome
902using homologous recombination
Applicants
  • 기초과학연구원 INSTITUTE FOR BASIC SCIENCE [KR]/[KR]
Inventors
  • 김진수 KIM, Jin-Soo
Agents
  • 유미특허법인 YOU ME PATENT AND LAW FIRM
Priority Data
62/446,95117.01.2017US
Publication Language Korean (KO)
Filing Language Korean (KO)
Designated States
Title
(EN) METHOD FOR IDENTIFYING BASE EDITING OFF-TARGET SITE BY DNA SINGLE STRAND BREAK
(FR) PROCÉDÉ D'IDENTIFICATION D'UN SITE HORS CIBLE D'ÉDITION DE BASES PAR CASSURE DE BRIN UNIQUE D'ADN
(KO) DNA 단일가닥 절단에 의한 염기 교정 비표적 위치 확인 방법
Abstract
(EN)
Provided are a DNA single strand break composition comprising cytidine deaminase, inactivated target-specific endonuclease, and guide RNA, a method for producing a DNA single strand break, using the same, a DNA nucleotide sequencing method with base editing introduced thereto, and a method for identifying (or measuring or detecting) a base editing position, base editing efficiency on an on-target site and an off-target site, and/or target specificity.
(FR)
L'invention concerne une composition de cassure de brin unique d'ADN comprenant de la cytidine-désaminase, une endonucléase spécifique à une cible inactivée et un ARN guide, un procédé de production d'une cassure de brin unique d'ADN, utilisant celle-ci, un procédé de séquençage de nucléotide d'ADN avec édition de bases introduit dans celui-ci, et un procédé d'identification (ou de mesure ou de détection) d'une position d'édition de bases, d'une efficacité d'édition de bases sur un site sur cible et sur un site hors cible, et/ou d'une spécificité cible.
(KO)
시티딘 디아미나제, 불활성화된 표적특이적 엔도뉴클레아제, 및 가이드 RNA를 포함하는, DNA 단일 가닥 절단 (single strand break)용 조성물, 이를 이용한 DNA 단일 가닥 절단 (single strand break) 생성 방법, 염기 교정 (base editing)이 도입된 DNA의 핵산 서열 분석 방법, 및 염기 교정 위치, on-target 부위에서의 염기 교정 효율, 비표적 위치 (off- target site), 및 /또는 표적 특이성을 확인 (또는 측정 또는 검출)하는 방법이 제공된다.
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