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1. (WO2018039567) IMMUNOTHERAPY MARKERS AND USES THEREFOR
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Pub. No.: WO/2018/039567 International Application No.: PCT/US2017/048629
Publication Date: 01.03.2018 International Filing Date: 25.08.2017
Chapter 2 Demand Filed: 22.06.2018
IPC:
G06F 19/18 (2011.01) ,G06F 19/00 (2011.01) ,G06F 19/22 (2011.01)
G PHYSICS
06
COMPUTING; CALCULATING; COUNTING
F
ELECTRIC DIGITAL DATA PROCESSING
19
Digital computing or data processing equipment or methods, specially adapted for specific applications
10
Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology
18
for functional genomics or proteomics, e.g. genotype-phenotype associations, linkage disequilibrium, population genetics, binding site identification, mutagenesis, genotyping or genome annotation, protein-protein interactions or protein-nucleic acid interactions
G PHYSICS
06
COMPUTING; CALCULATING; COUNTING
F
ELECTRIC DIGITAL DATA PROCESSING
19
Digital computing or data processing equipment or methods, specially adapted for specific applications
G PHYSICS
06
COMPUTING; CALCULATING; COUNTING
F
ELECTRIC DIGITAL DATA PROCESSING
19
Digital computing or data processing equipment or methods, specially adapted for specific applications
10
Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology
22
for sequence comparison involving nucleotides or amino acids, e.g. homology search, motif or SNP [Single-Nucleotide Polymorphism] discovery or sequence alignment
Applicants:
NANTOMICS, LLC [US/US]; 9920 Jefferson Boulevard Culver City, California 90232, US
Inventors:
NGUYEN, Andrew; US
SANBORN, John Zachary; US
RABIZADEH, Shahrooz; US
Agent:
FESSENMAIER, Martin; US
DEAN, Ryan; US
SHIN, Minyoung; US
TSANG, Mei; US
Priority Data:
62/379,70025.08.2016US
Title (EN) IMMUNOTHERAPY MARKERS AND USES THEREFOR
(FR) MARQUEURS POUR L'IMMUNOTHÉRAPIE ET LEURS UTILISATIONS
Abstract:
(EN) Systems and methods for prediction of the treatment outcome for immune therapy are presented in which omics data of a patient tumor sample are used. Most typically, the omics data are processed to identify mutational signatures (especially APOBEC/POLE signatures), immune checkpoint expression, and MSI status as leading indicators to predict the treatment outcome for immune therapy. Such prediction advantageously integrates various parameters that would otherwise, when individually considered, skew prediction outcome.
(FR) La présente invention concerne des systèmes et des procédés de prédiction du résultat d'un traitement pour une thérapie immunitaire qui utilisent des données omiques d'un échantillon de tumeur d'un patient. Typiquement, les données omiques sont traitées pour identifier des signatures mutationnelles (en particulier des signatures APOBEC/POLE), une expression de point de contrôle immunitaire et un statut MSI en tant qu'indicateurs de tête pour prédire le résultat de traitement d'une thérapie immunitaire. Une telle prédiction intègre avantageusement divers paramètres qui autrement, lorsqu'ils sont pris individuellement, biaiseraient un résultat de prédiction.
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Designated States: AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, HN, HR, HU, ID, IL, IN, IR, IS, JO, JP, KE, KG, KH, KN, KP, KR, KW, KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW
African Regional Intellectual Property Organization (ARIPO) (BW, GH, GM, KE, LR, LS, MW, MZ, NA, RW, SD, SL, ST, SZ, TZ, UG, ZM, ZW)
Eurasian Patent Office (AM, AZ, BY, KG, KZ, RU, TJ, TM)
European Patent Office (EPO) (AL, AT, BE, BG, CH, CY, CZ, DE, DK, EE, ES, FI, FR, GB, GR, HR, HU, IE, IS, IT, LT, LU, LV, MC, MK, MT, NL, NO, PL, PT, RO, RS, SE, SI, SK, SM, TR)
African Intellectual Property Organization (BF, BJ, CF, CG, CI, CM, GA, GN, GQ, GW, KM, ML, MR, NE, SN, TD, TG)
Publication Language: English (EN)
Filing Language: English (EN)