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1. (WO2018029108) BASECALLING FOR STOCHASTIC SEQUENCING PROCESSES
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Pub. No.: WO/2018/029108 International Application No.: PCT/EP2017/069820
Publication Date: 15.02.2018 International Filing Date: 04.08.2017
IPC:
C12Q 1/68
C CHEMISTRY; METALLURGY
12
BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
Q
MEASURING OR TESTING PROCESSES INVOLVING ENZYMES OR MICRO-ORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
1
Measuring or testing processes involving enzymes or micro-organisms; Compositions therefor; Processes of preparing such compositions
68
involving nucleic acids
Applicants:
F. HOFFMANN-LA ROCHE AG [CH/CH]; Grenzacherstrasse 124 4070 Basel, CH (AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BE, BF, BG, BH, BJ, BN, BR, BW, BY, BZ, CA, CF, CG, CH, CI, CL, CM, CN, CO, CR, CU, CY, CZ, DJ, DK, DM, DO, DZ, EC, EE, EG, ES, FI, FR, GA, GB, GD, GE, GH, GM, GN, GQ, GR, GT, GW, HN, HR, HU, ID, IE, IL, IN, IR, IS, IT, JO, JP, KE, KG, KH, KM, KN, KP, KR, KW, KZ, LA, LC, LK, LR, LS, LT, LU, LV, LY, MA, MC, MD, ME, MG, MK, ML, MN, MR, MT, MW, MX, MY, MZ, NA, NE, NG, NI, NL, NO, NZ, OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, SD, SE, SG, SI, SK, SL, SM, SN, ST, SV, SY, SZ, TD, TG, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, UZ, VC, VN, ZA, ZM, ZW)
ROCHE DIAGNOSTICS GMBH [DE/DE]; Sandhofer Straße 116 68305 Mannheim, DE (DE)
ROCHE SEQUENCING SOLUTIONS, INC. [US/US]; 4300 Hacienda Drive Pleasonton, California 94588, US (US)
Inventors:
MANNION, John; US
MAGER, Morgan; US
Agent:
HILDEBRANDT, Martin; DE
GOEHRING, Frank; DE
BURGER, Alexander; DE
JENNI, Wolfgang; DE
MISERA, Simon; DE
NASER, Werner; DE
SKOLAUT, Alexander; DE
EISENMANN, Ulrike; DE
MERTES, Maria; DE
HEINEMEYER, Thomas; DE
Priority Data:
62/372,25808.08.2016US
62/384,65007.09.2016US
Title (EN) BASECALLING FOR STOCHASTIC SEQUENCING PROCESSES
(FR) MISE EN ŒUVRE DE PROCESSUS STOCHASTIQUES DE SÉQUENÇAGE
Abstract:
(EN) The present invention provides a method to process signal values that are measured over time from a nucleic acid in a sequencing cell. The signal values can be used to create a histogram from which probability functions for different state (e.g., each corresponding to a different nucleotide) are determined. Each of the probability functions (e.g., as determined using a mixture model) can assign an emission probability of the signal corresponding to a particular nucleotide.
(FR) La présente invention concerne un procédé permettant de traiter les valeurs d'un signal émis par un acide nucléique dans une cellule de séquençage qui sont mesurées dans le temps. Les valeurs du signal peuvent servir à créer un histogramme à partir duquel sont déterminées des fonctions de probabilité pour différents états (par exemple correspondant chacun à un nucléotide différent). Chacune des fonctions de probabilité (par exemple celles déterminées à l'aide d'un modèle mixte) peut assigner une probabilité d'émission du signal correspondant à un nucléotide particulier.
Designated States: AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DJ, DK, DM, DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, HN, HR, HU, ID, IL, IN, IR, IS, JO, JP, KE, KG, KH, KN, KP, KR, KW, KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW
African Regional Intellectual Property Organization (ARIPO) (BW, GH, GM, KE, LR, LS, MW, MZ, NA, RW, SD, SL, ST, SZ, TZ, UG, ZM, ZW)
Eurasian Patent Office (AM, AZ, BY, KG, KZ, RU, TJ, TM)
European Patent Office (EPO) (AL, AT, BE, BG, CH, CY, CZ, DE, DK, EE, ES, FI, FR, GB, GR, HR, HU, IE, IS, IT, LT, LU, LV, MC, MK, MT, NL, NO, PL, PT, RO, RS, SE, SI, SK, SM, TR)
African Intellectual Property Organization (BF, BJ, CF, CG, CI, CM, GA, GN, GQ, GW, KM, ML, MR, NE, SN, TD, TG)
Publication Language: English (EN)
Filing Language: English (EN)