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1. WO2016176339 - SYNTHESIS OF OMEGA-PHENYL PRODUCTS AND DERIVATIVES THEREOF

Publication Number WO/2016/176339
Publication Date 03.11.2016
International Application No. PCT/US2016/029583
International Filing Date 27.04.2016
IPC
C12N 1/20 2006.1
CCHEMISTRY; METALLURGY
12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
1Microorganisms, e.g. protozoa; Compositions thereof; Processes of propagating, maintaining or preserving microorganisms or compositions thereof; Processes of preparing or isolating a composition containing a microorganism; Culture media therefor
20Bacteria; Culture media therefor
C12N 1/21 2006.1
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12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
1Microorganisms, e.g. protozoa; Compositions thereof; Processes of propagating, maintaining or preserving microorganisms or compositions thereof; Processes of preparing or isolating a composition containing a microorganism; Culture media therefor
20Bacteria; Culture media therefor
21modified by introduction of foreign genetic material
C12P 7/44 2006.1
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12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
PFERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
7Preparation of oxygen-containing organic compounds
40containing a carboxyl group
44Polycarboxylic acids
A61K 38/45 2006.1
AHUMAN NECESSITIES
61MEDICAL OR VETERINARY SCIENCE; HYGIENE
KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
38Medicinal preparations containing peptides
16Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
43Enzymes; Proenzymes; Derivatives thereof
45Transferases (2)
A61K 38/51 2006.1
AHUMAN NECESSITIES
61MEDICAL OR VETERINARY SCIENCE; HYGIENE
KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
38Medicinal preparations containing peptides
16Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
43Enzymes; Proenzymes; Derivatives thereof
51Lyases (4)
CPC
C12N 15/52
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15Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
09Recombinant DNA-technology
11DNA or RNA fragments; Modified forms thereof
52Genes encoding for enzymes or proenzymes
C12N 9/0006
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9Enzymes; Proenzymes; Compositions thereof
0004Oxidoreductases (1.)
0006acting on CH-OH groups as donors (1.1)
C12N 9/0008
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0004Oxidoreductases (1.)
0008acting on the aldehyde or oxo group of donors (1.2)
C12N 9/001
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9Enzymes; Proenzymes; Compositions thereof
0004Oxidoreductases (1.)
001acting on the CH-CH group of donors (1.3)
C12N 9/1029
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9Enzymes; Proenzymes; Compositions thereof
10Transferases (2.)
1025Acyltransferases (2.3)
1029transferring groups other than amino-acyl groups (2.3.1)
C12N 9/1096
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9Enzymes; Proenzymes; Compositions thereof
10Transferases (2.)
1096transferring nitrogenous groups (2.6)
Applicants
  • WILLIAM MARSH RICE UNIVERSITY [US]/[US]
Inventors
  • GONZALEZ, Ramon
  • CHEONG, Seokjung
  • CLOMBURG, James, M.
Agents
  • VALOIR, Tamsen
Priority Data
62/154,01028.04.2015US
Publication Language English (en)
Filing Language English (en)
Designated States
Title
(EN) SYNTHESIS OF OMEGA-PHENYL PRODUCTS AND DERIVATIVES THEREOF
(FR) SYNTHÈSE DE PRODUITS À FONCTION OMÉGA-PHÉNYLE ET DÉRIVÉS DE CEUX-CI
Abstract
(EN) This disclosure generally relates to the use of microorganisms to make omega-phenyl products, including omega-phenyl carboxylic acids, alcohols, amines, methyl ketones and their beta-functionalized derivatives. This is achieved by utilizing an iterative carbon chain elongation pathway that uses omega-phenyl CoA thioester primers. The core enzymes in the pathway include thiolase, dehydrogenase, dehydratase and reductase. Native or engineered thiolases catalyze the condensation of omega-phenyl CoA thioester primers with acetyl-CoA as the extender unit to generate omega-phenyl β-keto acyl-CoA. Dehydrogenase converts omega-phenyl β-keto acyl-CoA to omega-phenyl β-hydroxy acyl-CoA. Dehydratase converts omega-phenyl β-hydroxy acyl-CoA to omega-phenyl enoyl-CoA. Reductase converts omega- phenyl enoyl-CoA to omega-phenyl acyl-CoA. The platform can be operated in an iterative manner (i.e. multiple turns) by using the resulting omega-phenyl acyl-CoA as primer and acetyl-CoA as extender unit in subsequent turns of the cycle. Termination pathways acting on any of the four omega-phenyl CoA thioester intermediates terminate the platform and generate various omega-phenyl carboxylic acids, alcohols, and amines with different degrees of β -reduction.
(FR) La présente invention concerne d'une façon générale l'utilisation de microorganismes pour la fabrication de produits à fonction oméga-phényle, y compris d'acides oméga-phénylcarboxiliques, d'alcools à fonction oméga-phényle, d'amines à fonction oméga-phényle, de méthylcétones à fonction oméga-phényle et de leurs dérivés bêta-fonctionnalisés. Cela est réalisé en utilisant une voie itérative d'allongement des chaînes carbonées qui utilise des amorces de type thioester CoA à fonction oméga-phényle. Les enzymes au cœur de cette voie comprennent la thiolase, la déshydrogénase, la déshydratase et la réductase. Des thiolases natives ou génétiquement modifiées catalysent la condensation d'amorces de type thioester CoA à fonction oméga-phényle, l'acétyle-CoA servant de motif extenseur pour générer de la β-céto acyle-CoA à fonction oméga-phényle. Une déshydrogénase convertit la β-céto acyle-CoA à fonction oméga-phényle en β-hydroxy acyle-CoA à fonction oméga-phényle. Une déshydratase convertit la β-hydroxy acyle-CoA à fonction oméga-phényle en énoyl-CoA à fonction oméga-phényle. Une réductase convertit l'énoyl-CoA à fonction oméga-phényle en acyle-CoA à fonction oméga-phényle. La plate-forme peut être actionnée de manière itérative (c'est-à-dire à de multiples reprises) en utilisant l'acyle-CoA à fonction oméga-phényle résultante en tant qu'amorce et l'acétyle-CoA en tant que motif extenseur dans la suite du cycle. Des voies de terminaison agissant sur l'un quelconque des quatre intermédiaires de type thioester CoA à fonction oméga-phényle mettent fin à la plate-forme et génèrent divers acides oméga-phénylcarboxiliques, alcools à fonction oméga-phényle et amines à fonction oméga-phényle présentant divers degrés de réduction β.

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