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1. WO2014121091 - METHODS FOR GENOME ASSEMBLY AND HAPLOTYPE PHASING

Publication Number WO/2014/121091
Publication Date 07.08.2014
International Application No. PCT/US2014/014184
International Filing Date 31.01.2014
IPC
C12Q 1/68 2006.1
CCHEMISTRY; METALLURGY
12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
1Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
68involving nucleic acids
CPC
C12Q 1/6869
CCHEMISTRY; METALLURGY
12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS
1Measuring or testing processes involving enzymes, nucleic acids or microorganisms
68involving nucleic acids
6869Methods for sequencing
C12Q 1/6888
CCHEMISTRY; METALLURGY
12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS
1Measuring or testing processes involving enzymes, nucleic acids or microorganisms
68involving nucleic acids
6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
6888for detection or identification of organisms
C12Q 2521/301
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12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS
2521Reaction characterised by the enzymatic activity
30Phosphoric diester hydrolysing, i.e. nuclease
301Endonuclease
C12Q 2521/319
CCHEMISTRY; METALLURGY
12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS
2521Reaction characterised by the enzymatic activity
30Phosphoric diester hydrolysing, i.e. nuclease
319Exonuclease
C12Q 2521/501
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12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS
2521Reaction characterised by the enzymatic activity
50Other enzymatic activities
501Ligase
C12Q 2522/101
CCHEMISTRY; METALLURGY
12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS
2522Reaction characterised by the use of non-enzymatic proteins
10Nucleic acid binding proteins
101Single or double stranded nucleic acid binding proteins
Applicants
  • THE REGENTS OF THE UNIVERSITY OF CALIFORNIA [US]/[US]
Inventors
  • GREEN, Richard, E. Jr.
  • LAREAU, Liana, F.
Agents
  • BAKER, Joseph, R. Jr.
Priority Data
61/759,94101.02.2013US
61/892,35517.10.2013US
Publication Language English (en)
Filing Language English (EN)
Designated States
Title
(EN) METHODS FOR GENOME ASSEMBLY AND HAPLOTYPE PHASING
(FR) PROCÉDÉS POUR ASSEMBLAGE DU GÉNOME ET PHASAGE D'HAPLOTYPE
Abstract
(EN) The disclosure provides methods for greatly accelerating and improving de novo genome assembly. The methods disclosed herein utilize methods for data analysis that allow for rapid and inexpensive de novo assembly of genomes from one or more subjects. The disclosure further provides that the methods disclosed herein can be used in a variety of applications, including haplotype phasing, and metagenomics analysis.
(FR) La présente invention concerne des procédés qui permettent d'accélérer et d'améliorer fortement l'assemblage du génome de novo. Les procédés de la présente invention utilisent des procédés pour l'analyse de données qui permet l'assemblage rapide et peu coûteux de novo de génomes provenant d'un ou de plusieurs sujets. L'invention concerne en outre des procédés qui peuvent être utilisés dans une variété d'applications, comprenant le phasage d'haplotype et l'analyse métagénomique.
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