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1. (WO2007005768) INTERFACE METHOD AND SYSTEM FOR GENETIC ANALYSIS DATA
Latest bibliographic data on file with the International Bureau

Pub. No.: WO/2007/005768 International Application No.: PCT/US2006/025872
Publication Date: 11.01.2007 International Filing Date: 30.06.2006
IPC:
G06F 19/26 (2011.01) ,G06F 19/20 (2011.01)
G PHYSICS
06
COMPUTING; CALCULATING; COUNTING
F
ELECTRIC DIGITAL DATA PROCESSING
19
Digital computing or data processing equipment or methods, specially adapted for specific applications
10
Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology
26
for data visualisation, e.g. graphics generation, display of maps or networks or other visual representations
G PHYSICS
06
COMPUTING; CALCULATING; COUNTING
F
ELECTRIC DIGITAL DATA PROCESSING
19
Digital computing or data processing equipment or methods, specially adapted for specific applications
10
Bioinformatics, i.e. methods or systems for genetic or protein-related data processing in computational molecular biology
20
for hybridisation or gene expression, e.g. microarrays, sequencing by hybridisation, normalisation, profiling, noise correction models, expression ratio estimation, probe design or probe optimisation
Applicants:
APPLERA CORPORATION [US/US]; 850 Lincoln Centre Drive Foster City, CA 94404, US (AllExceptUS)
SUBRAMANIAM, Yerramalli [IN/US]; US
AUGUSTINE, Madhu [IN/US]; US
WOO, David [CA/US]; US
BURGHARDT, Jacob [US/US]; US
Inventors:
SUBRAMANIAM, Yerramalli; US
AUGUSTINE, Madhu; US
WOO, David; US
BURGHARDT, Jacob; US
Agent:
WIESNER, Leland; 366 Cambridge Avenue Palo Alto, CA 94306, US
Priority Data:
60/696,12730.06.2005US
Title (EN) INTERFACE METHOD AND SYSTEM FOR GENETIC ANALYSIS DATA
(FR) PROCEDE ET SYSTEME D'INTERFACE DE DONNEES D'ANALYSE GENETIQUE
Abstract:
(EN) Aspects of the present invention describe a method and apparatus for viewing and interfacing with gene expression on a computer device. A computer based device interfaces with gene the expression data by representing a plate having one or more wells and their contents with a matrix of elements addressable along at least two-dimensions. Each of the elements in the matrix are processed and then distinguished based upon their passing and failing one or more metrics for gene expression data. The interface displays those values associated with the distinguished elements in the matrix using colors, shapes and symbols. Depending on the results, some of the elements in the matrix may be flagged and then filtered from the data set. Remaining gene expression values not filtered from the matrix of elements are displayed and processed further.
(FR) Dans certains aspects, la présente invention concerne un procédé et un appareil permettant de visionner et d'interfacer l'expression de gènes sur un dispositif informatique. Un dispositif à base d'ordinateur interface des données d'expression de gènes par représentation d'une plaque possédant un ou plusieurs puits et leur contenu avec une matrice d'éléments adressables le long d'au moins deux dimensions. Chacun des éléments dans cette matrice sont traités puis distingués à partir de leur réussite ou de leur échec lors d'une évaluation dans un ou plusieurs dispositifs de mesures de données d'expression de gènes. Cette interface affiche les valeurs associées aux éléments distingués dans la matrice au moyen de couleurs, de formes et de symboles. En fonction des résultats, certains de ces éléments dans la matrice peuvent être étiquetés puis filtrés à partir de l'ensemble de données. Les valeurs d'expression de gènes restantes non filtrées à partir de la matrice d'éléments sont affichées et traitées à nouveau.
front page image
Designated States: AE, AG, AL, AM, AT, AU, AZ, BA, BB, BG, BR, BW, BY, BZ, CA, CH, CN, CO, CR, CU, CZ, DE, DK, DM, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, HN, HR, HU, ID, IL, IN, IS, JP, KE, KG, KM, KN, KP, KR, KZ, LA, LC, LK, LR, LS, LT, LU, LV, LY, MA, MD, MG, MK, MN, MW, MX, MZ, NA, NG, NI, NO, NZ, OM, PG, PH, PL, PT, RO, RS, RU, SC, SD, SE, SG, SK, SL, SM, SY, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW
African Regional Intellectual Property Organization (ARIPO) (BW, GH, GM, KE, LS, MW, MZ, NA, SD, SL, SZ, TZ, UG, ZM, ZW)
Eurasian Patent Organization (AM, AZ, BY, KG, KZ, MD, RU, TJ, TM)
European Patent Office (AT, BE, BG, CH, CY, CZ, DE, DK, EE, ES, FI, FR, GB, GR, HU, IE, IS, IT, LT, LU, LV, MC, NL, PL, PT, RO, SE, SI, SK, TR)
African Intellectual Property Organization (BF, BJ, CF, CG, CI, CM, GA, GN, GQ, GW, ML, MR, NE, SN, TD, TG)
Publication Language: English (EN)
Filing Language: English (EN)
Also published as:
EP1907965